ABOUT THIS RECORDspecies: Ipomoea batatas
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
TCATGTGTGTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAG
CTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATTGTTT
dot-bracket secondary structure
).....(..((((.((((.((((.(((((.((((((((((.(((((.(((....((((((..((.(((.((((....)))).))))).))))))....)))
.))))).)))))))))).))))).)))).)))).))))..)....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATGTGTGTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAG
CTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATTGTTT
dot-bracket secondary structure
).....(..((((.((((.((((.(((((.((((((((((.(((((.(((....((((((..((.(((.((((....)))).))))).))))))....)))
.))))).)))))))))).))))).)))).)))).))))..)....
SIMILARITIES| miRBase crt-MIR168: 8.0E-15 PMRD rco-miR168: 8.0E-15 microPC miR168: 2.0E-49 | UniProt no hits RFAM 8MIR168: 1.0E-13 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST046717) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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