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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001275
species: Ipomoea batatas
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0
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pre-miRNA
 CATGTGTGTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAG
CTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATTGTTT

dot-bracket secondary structure
.....(..((((.((((.((((.(((((.((((((((((.(((((.(((....((((((..((.(((.((((....)))).))))).))))))....)))
.))))).)))))))))).))))).)))).)))).))))..)....


SIMILARITIES
miRBase crt-MIR168: 0.000000000000008

PMRD rco-miR168: 0.000000000000008

microPC miR168: 2e-49		UniProt no hits

RFAM MIR168: 0.0000000000001		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST046717)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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