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ABOUT THIS RECORD

ID: MNEST001276
species: Ipomoea batatas
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTACACCTGCACCTGC

miRNA*
 AGGTGCAGAAGTAACTGCAGG

mismatches: 3
bulges: 0
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pre-miRNA
 TGAACCAAAATGTAGCCTTTGTCTGCATTTACACCTGCACCTGCACTTGCCTCAGCCCAGATCGAAAGCCTAGCTGCTGTGGTTGCGCCGCCGCATGATGG
TGTATGTGCGGCCGGCCGGCCGGAAAATGATGATGGGATGAGCTGAGGTAGGTAGTAGGTGCAGAAGTAACTGCAGGTGAATGCCATTTTGGATAT

dot-bracket secondary structure
)...((((((((..((.((((((((((.((((..((((((((((((((((((((((.((.........((((.......((((((.((((((((((.....
.....)))))).))))))))))...........)))).)).)))))))))))).))))))))))..)))).)))))))))).))))))))))....


SIMILARITIES
miRBase tcc-MIR530b: 6.0E-7

PMRD ptc-miR530a: 4.0E-5

microPC miR530: 3.0E-83		UniProt no hits

RFAM 0MIR530: 0.0007		most similar mature miRNAs

Identical with: miR530 from microPC (MNEST046439)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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