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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001276
species: Ipomoea batatas
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTACACCTGCACCTGC

miRNA*
 AGGTGCAGAAGTAACTGCAGG

mismatches: 3
bulges: 0
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pre-miRNA
 GAACCAAAATGTAGCCTTTGTCTGCATTTACACCTGCACCTGCACTTGCCTCAGCCCAGATCGAAAGCCTAGCTGCTGTGGTTGCGCCGCCGCATGATGG
TGTATGTGCGGCCGGCCGGCCGGAAAATGATGATGGGATGAGCTGAGGTAGGTAGTAGGTGCAGAAGTAACTGCAGGTGAATGCCATTTTGGATAT

dot-bracket secondary structure
...((((((((..((.((((((((((.((((..((((((((((((((((((((((.((.........((((.......((((((.((((((((((.....
.....)))))).))))))))))...........)))).)).)))))))))))).))))))))))..)))).)))))))))).))))))))))....


SIMILARITIES
miRBase tcc-MIR530b: 0.0000006

PMRD ptc-miR530a: 0.00004

microPC miR530: 3e-83		UniProt no hits

RFAM MIR530: 0.0007		most similar mature miRNAs

Identical with: miR530 from microPC (MNEST046439)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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