ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
TACGAGTTGAAGTAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGACCCCTCAAGTCCTATCTTTGTTGTTGTA
TAGGCTTTGTGGCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTTGGATTGAAGGGAGCTCTACACCTCCTCT
dot-bracket secondary structure
)..(((.....((((((((((((..(((((((.((((((((.(((.((((..((.((.((.(((((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).))))).)).)).))..))))..))).))))))))..)))))))..)))))))))))).....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TACGAGTTGAAGTAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGACCCCTCAAGTCCTATCTTTGTTGTTGTA
TAGGCTTTGTGGCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTTGGATTGAAGGGAGCTCTACACCTCCTCT
dot-bracket secondary structure
)..(((.....((((((((((((..(((((((.((((((((.(((.((((..((.((.((.(((((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).))))).)).)).))..))))..))).))))))))..)))))))..)))))))))))).....))).
SIMILARITIES| miRBase rco-MIR159: 1.0E-8 PMRD gma-miR159a: 4.0E-8 microPC miR159: 1.0E-78 | UniProt no hits RFAM 9MIR159: 5.0E-8 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
