ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
ACGAGTTGAAGTAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGACCCCTCAAGTCCTATCTTTGTTGTTGTA
TAGGCTTTGTGGCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTTGGATTGAAGGGAGCTCTACACCTCCTCT
dot-bracket secondary structure
..(((.....((((((((((((..(((((((.((((((((.(((.((((..((.((.((.(((((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).))))).)).)).))..))))..))).))))))))..)))))))..)))))))))))).....))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACGAGTTGAAGTAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGACCCCTCAAGTCCTATCTTTGTTGTTGTA
TAGGCTTTGTGGCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTTGGATTGAAGGGAGCTCTACACCTCCTCT
dot-bracket secondary structure
..(((.....((((((((((((..(((((((.((((((((.(((.((((..((.((.((.(((((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).))))).)).)).))..))))..))).))))))))..)))))))..)))))))))))).....))).
SIMILARITIES| miRBase rco-MIR159: 0.00000001 PMRD gma-miR159a: 0.00000004 microPC miR159: 1e-78 | UniProt no hits RFAM MIR159: 0.00000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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