ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCCGTCCATAATA miRNA* TTCCGGACGGAGGAAGTACTA mismatches: 5 bulges: 0 |
pre-miRNA
ATCACATGACAGCTACTCCCTCCGTCCATAATAAGTTGTCGCTCAAACGGATGTATCTAGCACTAATTCCGGACGGAGGAAGTACTATTTTCTTA
dot-bracket secondary structure
)......((.((.((((.(((((((((..(((.(((....(((.....(((....))))))))).)))..))))))))).)))))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCACATGACAGCTACTCCCTCCGTCCATAATAAGTTGTCGCTCAAACGGATGTATCTAGCACTAATTCCGGACGGAGGAAGTACTATTTTCTTA
dot-bracket secondary structure
)......((.((.((((.(((((((((..(((.(((....(((.....(((....))))))))).)))..))))))))).)))))).))......
SIMILARITIES| miRBase tae-MIR1133: 7.0E-5 PMRD tae-miR1133: 7.0E-5 microPC no hits | UniProt no hits RFAM 2MIR1122: 2.0E-5 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
