ABOUT THIS RECORDspecies: Linum usitatissimum
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGAACAGACAGAGCATGG miRNA* ATGCACTGCCTCTTCCCTGGCC mismatches: 3 bulges: 1 |
pre-miRNA
TGAGGTAAGAAGGAAGACGAGAAAAAAAGAGGCTGGGAACAGACAGAGCATGGATAGAGCTTACTTACAGAAACCCTTTTGTTTTGACCCTTCCCATGCAC
TGCCTCTTCCCTGGCCTTTTTCCCTCTTCTCTTCCACCCTCTTT
dot-bracket secondary structure
)((((......((((((.((((...((((((((((((((.((.(((.((((((...(((.......((((((....)))))).......))).)))))).)
)).)).))))).)))))))))...)))).))))))..))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAGGTAAGAAGGAAGACGAGAAAAAAAGAGGCTGGGAACAGACAGAGCATGGATAGAGCTTACTTACAGAAACCCTTTTGTTTTGACCCTTCCCATGCAC
TGCCTCTTCCCTGGCCTTTTTCCCTCTTCTCTTCCACCCTCTTT
dot-bracket secondary structure
)((((......((((((.((((...((((((((((((((.((.(((.((((((...(((.......((((((....)))))).......))).)))))).)
)).)).))))).)))))))))...)))).))))))..))))...
SIMILARITIES| miRBase ptc-MIR408: 3.0E-8 PMRD ptc-miR408: 3.0E-8 microPC miR408: 3.0E-8 | UniProt no hits RFAM 8MIR408: 5.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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