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ABOUT THIS RECORD
ID:
MNEST001428
species:
Lotus japonicus
miRNA family:
MIRf375
source:
miRNEST
Taxonomy by NCBI:
Lotus japonicus
Lotus
Loteae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCAGCAGCAGCATCATCAGC
miRNA*
TGGTGAGAGCTGGTGTTGTTAG
mismatches:
4
bulges:
1
View larger
pre-miRNA
TGGAGGAGTTCT
TGGTGAGAGCTGGTGTTGTTAG
AGAAGACGCGAAGAACGATGCGGTTTTCGCTGATCTGGCTCGTGCTGGGAACAATAGTGGTTTGGG
ATTTGAGTTTCAGGCTCAGCAGATGAACAGGATTGCTGGTTTGATGGGTGGTAATAATAGGATTCCTGGTGCCAGTGATGATCCAATTGTGTCTCTTCAG
AATTCTACCAATTTGCCCTTGAATGCTAATGGTTTCAGATCACCAAATCAGCAACAACAGATGCAGAATTCACATCAGCAGAATCATC
AGCAGCAGCAGC
ATCATCAGC
AACAACAGA
dot-bracket secondary structure
.......(((.(
((((((..((((.((((((..(
((.(((.(((((((.((...)).)))))))...)))..))).((((((....(((..(((((((((
(((((((..(((((((((((((((....((((((.((((......(((.....(((((.(((((((((....))).))..)))).)))))..))).))))
))))))....))))))...)))..)))..))).)))))))).))))))))(((........)))...)))....))))))((....))
.)))))).))))
.))))))).
)))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9M7Q4|AI5L5_ARATH: 0.0004
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record