ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: miR160c
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTACAAGGAGCCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
TTTTTGGTATTTTGTTATTTGTTTATTAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCACATCACCACGGTGATGGCCTAATGAATGG
CGTACAAGGAGCCAAGCATGCTGTGTGTTGCTATTTAGCTTCTACAAATTTCTTAT
dot-bracket secondary structure
)....((...(((((...(((..((.((((((((...((((((.(((((((.((((((((((((((((.((.((((((....)))))))))).))))))))
)))))).))))))).)))))).)))))))).))..))).....)))))...))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTGGTATTTTGTTATTTGTTTATTAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCACATCACCACGGTGATGGCCTAATGAATGG
CGTACAAGGAGCCAAGCATGCTGTGTGTTGCTATTTAGCTTCTACAAATTTCTTAT
dot-bracket secondary structure
)....((...(((((...(((..((.((((((((...((((((.(((((((.((((((((((((((((.((.((((((....)))))))))).))))))))
)))))).))))))).)))))).)))))))).))..))).....)))))...))...
SIMILARITIES| miRBase mtr-MIR160d: 3.0E-14 PMRD mtr-miR160d: 3.0E-14 microPC miR160: 3.0E-11 | UniProt no hits RFAM 0mir-160: 1.0E-11 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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