ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTCCAGATTCGTAGTACTAT miRNA* AGTATTATGAATTTGGACATG mismatches: 1 bulges: 0 |
pre-miRNA
TACTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGG
dot-bracket secondary structure
..(((.((((((((((((((((((((((((.........)))))))))))))))))))))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGG
dot-bracket secondary structure
..(((.((((((((((((((((((((((((.........)))))))))))))))))))))))).))).
SIMILARITIES| miRBase osa-MIR1862b: 0.0007 PMRD osa-miRf11002-akr: 0.0002 microPC no hits | UniProt no hits RFAM MIR1122: 0.000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
