miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST001497
species: Manihot esculenta
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACCAAAGAAGATTTGCCCCA

miRNA*
 GGGCAATTCTTGCTTTGGCAGT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 ATGTTTATGGGTATGCATTCCTGGGCAATTCTTGCTTTGGCAGTTGGCAACTCATGTTGTAATCAACTACAAAGAGTAGGCCTACTACCAAAGAAGATTT
GCCCCACAATTCAGTCCATACAATT

dot-bracket secondary structure
.(((..(((((..((.(((...((((((.((((.((((((.(((.(((.((((...(((((......))))).))))..))).))).)))))))))).))
))))...))).)).))))))))...


SIMILARITIES
miRBase ptc-MIR399e: 0.00002

PMRD ptc-miR399e: 0.00002

microPC miR399: 1e-41		UniProt no hits

RFAM mir-399: 0.000000007		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST045383)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;