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ABOUT THIS RECORD

ID: MNEST001498
species: Manihot esculenta
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACGACGAGAGAGAGCACAC

miRNA*
 GTGCTCTCTGCCGTCGTCATA

mismatches: 2
bulges: 0
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pre-miRNA
 TATCTCGTTCTCTTGATTGCCTTAGCTTTGACATAATTGGTTGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAG
TGTGCTCTCTGCCGTCGTCATACAATATGGTCAAAGAAGGTTTATCTTTACTGGCACATG

dot-bracket secondary structure
......((.((...(((.(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))
))))))))))..))))))))..))))...))))))))))))..)))......)).))...


SIMILARITIES
miRBase rco-MIR535: 0.0000001

PMRD rco-miR535: 0.0000001

microPC miR535: 3e-39		UniProt no hits

RFAM MIR535: 0.000000002		most similar mature miRNAs

Identical with: miR535 from microPC (MNEST045695)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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