ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 2 bulges: 0 |
pre-miRNA
GCGGCTGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCTT
GATTGGTTGAGATCGGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCG
dot-bracket secondary structure
)..((.((((((.(((((.((((((((((.(((((.((((((.(((((.((.(((((((....)))))))..((((...((((....((((.....)))).
...)))).))))..))...))))).)))))).))))).)))))))))).))))).)))))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGGCTGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCTT
GATTGGTTGAGATCGGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCG
dot-bracket secondary structure
)..((.((((((.(((((.((((((((((.(((((.((((((.(((((.((.(((((((....)))))))..((((...((((....((((.....)))).
...)))).))))..))...))))).)))))).))))).)))))))))).))))).)))))).)).
SIMILARITIES| miRBase tcc-MIR168: 4.0E-17 PMRD rco-miR168: 9.0E-15 microPC miR168: 2.0E-74 | UniProt no hits RFAM 8MIR168: 4.0E-17 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST044989) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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