ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
CCGGCTGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCT
TGATTGGTTGAGATCGGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGG
dot-bracket secondary structure
...((.((((((.(((((.((((((((((.(((((.((((((.(((((.((.(((((((....)))))))..((((...((((....((((.....))))
....)))).))))..))...))))).)))))).))))).)))))))))).))))).)))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGGCTGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCT
TGATTGGTTGAGATCGGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGG
dot-bracket secondary structure
...((.((((((.(((((.((((((((((.(((((.((((((.(((((.((.(((((((....)))))))..((((...((((....((((.....))))
....)))).))))..))...))))).)))))).))))).)))))))))).))))).)))))).))..
SIMILARITIES| miRBase tcc-MIR168: 1e-17 PMRD rco-miR168: 0.000000000000002 microPC miR168: 2e-74 | UniProt no hits RFAM MIR168: 1e-17 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST044989) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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