miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST001507
species: Manihot esculenta
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

View larger
pre-miRNA
CCGGCTGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCT
TGATTGGTTGAGATCGGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGG


dot-bracket secondary structure
...((.((((((.(((((.((((((((((.(((((.((((((.(((((.((.(((((((....)))))))..((((...((((....((((.....))))
....)))).))))..))...))))).)))))).))))).)))))))))).))))).)))))).))..



SIMILARITIES
miRBase tcc-MIR168: 1e-17

PMRD rco-miR168: 0.000000000000002

microPC miR168: 2e-74
UniProt no hits

RFAM MIR168: 1e-17
most similar mature miRNAs

Identical with: miR168 from microPC (MNEST044989)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;