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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001507
species: Manihot esculenta
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0
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pre-miRNA
 CCGGCTGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCT
TGATTGGTTGAGATCGGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGG

dot-bracket secondary structure
...((.((((((.(((((.((((((((((.(((((.((((((.(((((.((.(((((((....)))))))..((((...((((....((((.....))))
....)))).))))..))...))))).)))))).))))).)))))))))).))))).)))))).))..


SIMILARITIES
miRBase tcc-MIR168: 1e-17

PMRD rco-miR168: 0.000000000000002

microPC miR168: 2e-74		UniProt no hits

RFAM MIR168: 1e-17		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST044989)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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