ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
CTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTCTTTTGATGCTTTTACATACAGATCTAAGCATATTGATCAACTGCTAGTGTCGTCGGACCAGG
CTTCATTCCCCCCAATTAA
dot-bracket secondary structure
.....(((.((((((((..((((((.((((.(((...((.(((((((((..............)))))......)))).....)).))).)))).)))))
)..)))))))).)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTCTTTTGATGCTTTTACATACAGATCTAAGCATATTGATCAACTGCTAGTGTCGTCGGACCAGG
CTTCATTCCCCCCAATTAA
dot-bracket secondary structure
.....(((.((((((((..((((((.((((.(((...((.(((((((((..............)))))......)))).....)).))).)))).)))))
)..)))))))).)))....
SIMILARITIES| miRBase rco-MIR166e: 0.000000000000002 PMRD vvi-miR166c: 0.000000000002 microPC miR166: 7e-52 | UniProt no hits RFAM mir-166: 0.000000000000002 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045748) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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