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ABOUT THIS RECORD

ID: MNEST001529
species: Manihot esculenta
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 ACTGGGAACAGGCAGAGCATG

mismatches: 5
bulges: 0
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pre-miRNA
 TGGGGAAGCGGGGAAAGAAAGAGGCTGACAAAGACTGGGAACAGGCAGAGCATGGATGGAGCTATTAATGGAAATATCTGTTTTGGCTCCACCCATGCAC
TGCCTCTTCCCTGGCTTGTGGCTCCTCCTTTTCTCCCTCCTCACTT

dot-bracket secondary structure
((((((...((((((((..((.(((((...(((...(((((.((((((.((((((.((((((((..((((((....)))))).)))))))).)))))).)
))))).)))))...))).))))).))..)))))))).))))))...


SIMILARITIES
miRBase ptc-MIR408: 4e-29

PMRD ptc-miR408: 4e-29

microPC miR408: 9e-24		UniProt no hits

RFAM MIR408: 2e-31		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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