miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Manihot esculenta, Ricinus communis



ABOUT THIS RECORD

ID: MNEST001529
species: Manihot esculenta
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGCT

miRNA*
ACTGGGAACAGGCAGAGCATG

mismatches: 5
bulges: 0

View larger
pre-miRNA
TGGGGAAGCGGGGAAAGAAAGAGGCTGACAAAGACTGGGAACAGGCAGAGCATGGATGGAGCTATTAATGGAAATATCTGTTTTGGCTCCACCCATGCAC
TGCCTCTTCCCTGGCT
TGTGGCTCCTCCTTTTCTCCCTCCTCACTT


dot-bracket secondary structure
((((((...((((((((..((.(((((...(((...(((((.((((((.((((((.((((((((..((((((....)))))).)))))))).)))))).)
))))).)))))...))
).))))).))..)))))))).))))))...



SIMILARITIES
miRBase ptc-MIR408: 4e-29

PMRD ptc-miR408: 4e-29

microPC miR408: 9e-24
UniProt no hits

RFAM MIR408: 2e-31
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;