ABOUT THIS RECORDspecies: Mesembryanthemum crystallinum
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAGCTGTGGGAAA mismatches: 0 bulges: 0 |
pre-miRNA
GCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAA
GCTGTGGGAAAATATGGCG
dot-bracket secondary structure
)..((((((.((((((((((((((((((((((((((((((..((((((...................))))))..)))).......)))))))))))))))
))))))))))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAA
GCTGTGGGAAAATATGGCG
dot-bracket secondary structure
)..((((((.((((((((((((((((((((((((((((((..((((((...................))))))..)))).......)))))))))))))))
))))))))))).)))))).
SIMILARITIES| miRBase vvi-MIR396b: 2.0E-11 PMRD vvi-miR396b: 2.0E-11 microPC miR396: 1.0E-34 | UniProt no hits RFAM 6MIR396: 2.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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