miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001552
species: Mesembryanthemum crystallinum
miRNA family: MIR1023
source: miRNEST

Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTCTCTCTCCATTTCTCTCT

miRNA*
 AGAAAAATGGCGGAACAAGG

mismatches: 5
bulges: 1
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pre-miRNA
 ACCCACACCCCTCTCTCTCTCCATTTCTCTCTCTCTCTCTCCTCTCTATCCCTCTCTCATATAAGACCTTCGATCCTTCAAATTCTTCACCTCATTTCGT
ATAAAAACACTATCATTTTCAAATTCTTGGCGCTTTGATCTCTCATTTGAACACTATAAAGCTCTGAAAACCCCCTATTTTCCCCCAAATCAGCTGACCC
AGAAAAGAGAAAACCCTAGATTTGGGTTTGGTAGGATTAGGGTGATTTCAAGAAGAGGGGGAGGGAGGTGATCCCAGATATATAGATAGAGAAAAATGGC
GGAACAAGGCTTGGAAG

dot-bracket secondary structure
..(((....(((...(((..((((((.(((((.((((...(((((((.(((((((.((...(((((..................................
........................)))))..((((((.....((....))......))))))..(((((...(((((...(((.(((........(((((
(((....((......))...)))))))))))..))).)))))...))))).))))))))).))))))).)).............)).))))).)))))).
)))...)))..)))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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