ABOUT THIS RECORDspecies: Mimulus guttatus var. nasutus
miRNA family: MIRf1449
source: miRNEST
Taxonomy by NCBI:
Mimulus guttatus var. nasutus Mimulus guttatus subsp. guttatus Mimulus guttatus Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGAGGATTCGACGGTGCT miRNA* CGTTGTCGTACGCTCTGGCTG mismatches: 4 bulges: 0 |
pre-miRNA
AATGTCTCCCTGCTGGAGGATTCGACGGTGCTGCTCTGGCTGGGGCTGCGGATATTGGTGAAGAAACCATTGGCTTTGTTGATGTCCGTATCGGGCGGAG
GAAAATTCGTCTTGGCCTTGGAGCCGCGGAATCGGCGGGCGGCGTTGTCGTACGCTCTGGCTGCCTCCTCC
dot-bracket secondary structure
...........(((((((....((((((((((((((..(((((..((((((.((..(((.((((...(((((((...)))))))(((((.....))))).
((....)).)))).))).))...))))))..)))))))))))))))))))....)))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATGTCTCCCTGCTGGAGGATTCGACGGTGCTGCTCTGGCTGGGGCTGCGGATATTGGTGAAGAAACCATTGGCTTTGTTGATGTCCGTATCGGGCGGAG
GAAAATTCGTCTTGGCCTTGGAGCCGCGGAATCGGCGGGCGGCGTTGTCGTACGCTCTGGCTGCCTCCTCC
dot-bracket secondary structure
...........(((((((....((((((((((((((..(((((..((((((.((..(((.((((...(((((((...)))))))(((((.....))))).
((....)).)))).))).))...))))))..)))))))))))))))))))....)))))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9FE67|ERF80_ARATH: 0.000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
