ABOUT THIS RECORDspecies: Nicotiana benthamiana
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAGGGATGACTTGCCGA miRNA* GGCAAGTTGTCCCTGGCTACA mismatches: 1 bulges: 0 |
pre-miRNA
GAAGAAATAGAGAGTGGATTGCAGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTC
CCTGGCTACATTTCTCATGCAAGCCTCT
dot-bracket secondary structure
.........(((((.....((.(((((((((((((((((((((((.(((((.((...((((......)))).)).)))))...))).)))))))))))))
))))))).)).)))))............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAGAAATAGAGAGTGGATTGCAGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTC
CCTGGCTACATTTCTCATGCAAGCCTCT
dot-bracket secondary structure
.........(((((.....((.(((((((((((((((((((((((.(((((.((...((((......)))).)).)))))...))).)))))))))))))
))))))).)).)))))............
SIMILARITIES| miRBase vvi-MIR169s: 0.0000004 PMRD vvi-miR169s: 0.0000004 microPC miR169: 2e-43 | UniProt no hits RFAM MIR169_2: 0.000007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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