ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATACTCCCTCCGTTCCAAT miRNA* TGAAACGGAGAGAATATTCCT mismatches: 5 bulges: 0 |
pre-miRNA
AAATCCTTAAATAATACTCCCTCCGTTCCAATTTGATTGAACCTATTTGGTTGGGCACAGAGTTTAAGAAAAAAGAGAAGACTTTTGAAACTTGTGGTCT
AAAATAATCCATAGATTTTAAAGTTAAATTGTTTCTAAATTTTGAAAGGGTTCATTCTTTTCGAAACTGACTAAAAAGAAAATAGGTTCATTCTTTTTGA
AACGGAGAGAATATTCCTTTATATGA
dot-bracket secondary structure
............((((.((.(((((((.(((...((.(((((((((((..((((...(((...((.(((((...((...((((((.((((.((((((..(
(...))..)))))).))))))))))...)).))))).))(((((((((((.....)))))))))))))).)))).....))))))))))).))...))).
))))))).)).))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAATCCTTAAATAATACTCCCTCCGTTCCAATTTGATTGAACCTATTTGGTTGGGCACAGAGTTTAAGAAAAAAGAGAAGACTTTTGAAACTTGTGGTCT
AAAATAATCCATAGATTTTAAAGTTAAATTGTTTCTAAATTTTGAAAGGGTTCATTCTTTTCGAAACTGACTAAAAAGAAAATAGGTTCATTCTTTTTGA
AACGGAGAGAATATTCCTTTATATGA
dot-bracket secondary structure
............((((.((.(((((((.(((...((.(((((((((((..((((...(((...((.(((((...((...((((((.((((.((((((..(
(...))..)))))).))))))))))...)).))))).))(((((((((((.....)))))))))))))).)))).....))))))))))).))...))).
))))))).)).))))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
