ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAACACA miRNA* TACTCACTGCTCTATCTGTCACC mismatches: 2 bulges: 2 |
pre-miRNA
AAAATTAAAGGTGACAGAAGAGAGTGAACACACATGGTGTTTTCTGGCATATGATATACTTGAAGCTATGTGTACTCACTGCTCTATCTGTCACCCCCAC
CAC
dot-bracket secondary structure
.........((((((((((((((((((..(((((((((...(((.((.(((...))).)).))))))))))))..))))).)))).))))))))).....
...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAATTAAAGGTGACAGAAGAGAGTGAACACACATGGTGTTTTCTGGCATATGATATACTTGAAGCTATGTGTACTCACTGCTCTATCTGTCACCCCCAC
CAC
dot-bracket secondary structure
.........((((((((((((((((((..(((((((((...(((.((.(((...))).)).))))))))))))..))))).)))).))))))))).....
...
SIMILARITIES| miRBase mtr-MIR156c: 0.00000000002 PMRD ath-miR156e: 0.0000000003 microPC miR156: 3e-41 | UniProt no hits RFAM mir-156: 0.000000000000006 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045906) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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