miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil

ABOUT THIS RECORD

ID: MNEST001663
species: Nicotiana tabacum
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGACAGAAGAGAGTGAACACA

miRNA*
TACTCACTGCTCTATCTGTCACC

mismatches: 2
bulges: 2

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pre-miRNA
AAAATTAAAGGTGACAGAAGAGAGTGAACACACATGGTGTTTTCTGGCATATGATATACTTGAAGCTATGTGTACTCACTGCTCTATCTGTCACCCCCAC
CAC

dot-bracket secondary structure
.........((((((((((((((((((..(((((((((...(((.((.(((...))).)).))))))))))))..))))).)))).))))))))).....
...

UniProt no hits

RFAM mir-156: 0.000000000000006

most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045906)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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