ABOUT THIS RECORDspecies: Ocimum basilicum
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Ocimum basilicum Ocimum Ocimeae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGGGGGATTCCTTCCTTA miRNA* AGGGTGGACTCCTTCTGGATG mismatches: 3 bulges: 0 |
pre-miRNA
AATAGAGGCGGAGGACAAGGGGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAACAAAGATCAACCTC
TGCTGGTCCGGGGGGATTCCTTCCTTATCCTAAATCTTAGCCTTCA
dot-bracket secondary structure
)...(((((..((((..((((.(((((.(((.((((((((((........((((((.((((...((.........................))...)))).
)))))))))))))))).))).))))).))))...)))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATAGAGGCGGAGGACAAGGGGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAACAAAGATCAACCTC
TGCTGGTCCGGGGGGATTCCTTCCTTATCCTAAATCTTAGCCTTCA
dot-bracket secondary structure
)...(((((..((((..((((.(((((.(((.((((((((((........((((((.((((...((.........................))...)))).
)))))))))))))))).))).))))).))))...)))).)))))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 2.0E-15 microPC no hits | UniProt sp|Q9FHQ6|UBQ9_ARATH: 3.0E-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
