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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001680
species: Ocimum basilicum
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Ocimum basilicum Ocimum Ocimeae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCGGGGGGATTCCTTCCTTA

miRNA*
 AGGGTGGACTCCTTCTGGATG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATAGAGGCGGAGGACAAGGGGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAACAAAGATCAACCTC
TGCTGGTCCGGGGGGATTCCTTCCTTATCCTAAATCTTAGCCTTCA

dot-bracket secondary structure
...(((((..((((..((((.(((((.(((.((((((((((........((((((.((((...((.........................))...)))).
)))))))))))))))).))).))))).))))...)))).)))))..


SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.000000000000002

microPC no hits		UniProt sp|Q9FHQ6|UBQ9_ARATH: 3e-17

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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