ABOUT THIS RECORDspecies: Ocimum basilicum
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Ocimum basilicum Ocimum Ocimeae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGGGACGGAGGGAGTACAA miRNA* TTACTCCCTCCGTCCCGCGAG mismatches: 5 bulges: 0 |
pre-miRNA
CCCACTTTATTTATTACTCCCTCCGTCCCGCGAGAATTGTCCCAAAACTTTTAGGCGCGGGTATCAAGGAAAAAGAAAATTAGTGGTGTGAGTGGGTGGA
GGAGTGAGGTTGATGAATTCTAACCACTAAATCCTTTCCATTTTTGGTAATGGGACTAATAAATGGGAAAGACCAAAAAGGAAAGTGGGACAATTTAAAT
GGGACGGAGGGAGTACAATTCTAGAAAA
dot-bracket secondary structure
..............((((((((((((((((...(((((((((((...(((((.(((((...(((((..((.........))..)))))...)))(((((.
(((((...........)))))..)))))...((.((((((((((((((......))))).))))))))).)))).))))).....)))))))))))...)
))))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCCACTTTATTTATTACTCCCTCCGTCCCGCGAGAATTGTCCCAAAACTTTTAGGCGCGGGTATCAAGGAAAAAGAAAATTAGTGGTGTGAGTGGGTGGA
GGAGTGAGGTTGATGAATTCTAACCACTAAATCCTTTCCATTTTTGGTAATGGGACTAATAAATGGGAAAGACCAAAAAGGAAAGTGGGACAATTTAAAT
GGGACGGAGGGAGTACAATTCTAGAAAA
dot-bracket secondary structure
..............((((((((((((((((...(((((((((((...(((((.(((((...(((((..((.........))..)))))...)))(((((.
(((((...........)))))..)))))...((.((((((((((((((......))))).))))))))).)))).))))).....)))))))))))...)
))))))))))))))).............
SIMILARITIES| miRBase osa-MIR812h: 0.00005 PMRD osa-miRf11216-akr: 0.00005 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
