miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001704
species: Panicum virgatum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTACTCCCTTCGTTCCAAATT

miRNA*
 TTTGGAATGTAGGGAGTACTT

mismatches: 2
bulges: 0
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pre-miRNA
 TCAGTAGTTTACTACTCCCTTCGTTCCAAATTATAAGACATTATAAAAATTTTAGAGAGTCAAAGCAATATCAAGTTTATCAAGATTATAGAAAAAATAT
AAAAAATTATGATATCAAATTGATATACTATAAAAATATAACTAATAAAGAATCTAATGGTACTTAGTTTATATAATAAATATCATTATTCTATTATATA
AATTTGATCAAACATAAAAAAAATTGACTCTACAAGATTGTTGGAATGTTACAATTTAGATTGTTGGAATGTTATAATTTGGAATGTAGGGAGTACTTAC
CACCTG

dot-bracket secondary structure
...((.((....((((((((.((((((((((((((.((((((.(((.((((((..((((((((...........((((((((((.(((((.......)))
))....(((((((((((...))))))..)))))...((((..((((..((((..((((((((.(((..........))).))))))))))))))))))))
..)))))).))))..........))))))))..)))))).))).))))))(((.(((((....))))).))))))))))))))))).))))))))...))
.))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM MIR1122: 0.000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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