ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCAAAAGATTCGTCTCGCG miRNA* ACGAGACAATCTTTTAAGCCT mismatches: 2 bulges: 2 |
pre-miRNA
ACAAAACTAGTTACATAGTTTGGATGTACACGACGAGACAATCTTTTAAGCCTAATTAGTGCATGATTAGCCATAAGTGCTACAGTAACTCGCATGTGCT
AATGATACGGTCAAAGGCCTCAAAAGATTCGTCTCGCGGTTTTCAGGTGAATTCTGAAATTAGTTTT
dot-bracket secondary structure
..((((((((((.((.((((((..((.((.((.((((((((((((((.(((((..((((((((((..((((.......))))..........))))))))
))((((...)))).))).)).)))))))).))))))))))...))..)))))).)).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAAAACTAGTTACATAGTTTGGATGTACACGACGAGACAATCTTTTAAGCCTAATTAGTGCATGATTAGCCATAAGTGCTACAGTAACTCGCATGTGCT
AATGATACGGTCAAAGGCCTCAAAAGATTCGTCTCGCGGTTTTCAGGTGAATTCTGAAATTAGTTTT
dot-bracket secondary structure
..((((((((((.((.((((((..((.((.((.((((((((((((((.(((((..((((((((((..((((.......))))..........))))))))
))((((...)))).))).)).)))))))).))))))))))...))..)))))).)).))))))))))
SIMILARITIES| miRBase osa-MIR2124a: 0.0005 PMRD osa-miRf12034-akr: 4e-17 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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