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Species belonging to selected taxon:
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST001736
species:
Panicum virgatum
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTCAAAAGATTCGTCTCGCG
miRNA*
ACGAGACAATCTTTTAAGCCT
mismatches:
2
bulges:
2
View larger
pre-miRNA
ACAAAACTAGTTACATAGTTTGGATGTACACG
ACGAGACAATCTTTTAAGCCT
AATTAGTGCATGATTAGCCATAAGTGCTACAGTAACTCGCATGTGCT
AATGATACGGTCAAAGG
CCTCAAAAGATTCGTCTCGCG
GTTTTCAGGTGAATTCTGAAATTAGTTTT
dot-bracket secondary structure
..((((((((((.((.((((((..((.((.((
.((((((((((((((.(((((
..((((((((((..((((.......))))..........))))))))
))((((...)))).)))
.)).)))))))).))))))))
))...))..)))))).)).))))))))))
SIMILARITIES
miRBase
osa-MIR2124a
:
0.0005
PMRD
osa-miRf12034-akr
:
4e-17
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record