ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf75
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACGAGACGAATCTTTTGAGG miRNA* TCAAAAGATTCGTCTCGTCGT mismatches: 2 bulges: 0 |
pre-miRNA
TTTCAGAATTTACTTGGAAACCACGAGACGAATCTTTTGAGGCCTTTGACCGCATCATTATCACATGTGGGTTATTGTAGCACTTATAGCTAATCATGCA
CTAATTAGGCTCAAAAGATTCGTCTCGTCGTGTACATCCAAACTGCGTA
dot-bracket secondary structure
.............(((((.((.(((((((((((((((((((.(((......((((.((((.....(((((((.........)))))))..)))).)))).
......)))))))))))))))))))))).)).....)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCAGAATTTACTTGGAAACCACGAGACGAATCTTTTGAGGCCTTTGACCGCATCATTATCACATGTGGGTTATTGTAGCACTTATAGCTAATCATGCA
CTAATTAGGCTCAAAAGATTCGTCTCGTCGTGTACATCCAAACTGCGTA
dot-bracket secondary structure
.............(((((.((.(((((((((((((((((((.(((......((((.((((.....(((((((.........)))))))..)))).)))).
......)))))))))))))))))))))).)).....)))))........
SIMILARITIES| miRBase osa-MIR2124a: 0.0000001 PMRD osa-miRf10240-akr: 6e-22 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
