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ABOUT THIS RECORD

ID: MNEST001759
species: Panicum virgatum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCCGTCCCAAAATAAGTGT

miRNA*
 ACTTACTTTGGGACGGAGGGA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 ACTTGGGGCTTCCATGTACTCCCTCCGTCCCAAAATAAGTGTTGTTTTAGAAAATTTCAGACACATTACTCATCCTAAGAAATGACTTTCCCCTAATTAC
TTCTAGCAATTGTGCTTCAAAACCGTGTTATTTATTTGGTTTTCTGGATCCTCAATGAATGCATATACATCGGAACTAGAAAAGTGACATCTGCTAAGTA
TTTGATTGGCTCTATGCGTTTTCCTGCAATGTTTTCTTTGTACTTGATATTGATTTAACTAGATGGATCTCATTACAAGCTAAAACAACACTTTGTGGGA
CAAAATTTGAATGCTAAAACCAACACTTACTTTGGGACGGAGGGAGTATGTAGTTACTTTAGG

dot-bracket secondary structure
...((((...)))).(((((((((((((((((((.(((((((((((((((.....((((((..((((.((.......)).))))...(.....(((.(((
(..(((((..(((((((..((((((.((.....)).))))))(((((.(((...(((.((....)).))).))).))))).)))).)))..)))))))))
.)))...)((.....)).((.((((((((((((((.((((((..(((.(((.((((....)))).))).))).))))))..)))))).....))))))))
.))..))))))..)))))).))))))))).)))))))))))))))))))..............


SIMILARITIES
miRBase osa-MIR1862c: 0.00002

PMRD osa-miRf10381-akr: 0.000001

microPC miR1439: 0.000001		UniProt no hits

RFAM MIR806: 0.0000004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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