miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST001759
species:
Panicum virgatum
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTCCGTCCCAAAATAAGTGT
miRNA*
ACTTACTTTGGGACGGAGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
ACTTGGGGCTTCCATGTACTC
CCTCCGTCCCAAAATAAGTGT
TGTTTTAGAAAATTTCAGACACATTACTCATCCTAAGAAATGACTTTCCCCTAATTAC
TTCTAGCAATTGTGCTTCAAAACCGTGTTATTTATTTGGTTTTCTGGATCCTCAATGAATGCATATACATCGGAACTAGAAAAGTGACATCTGCTAAGTA
TTTGATTGGCTCTATGCGTTTTCCTGCAATGTTTTCTTTGTACTTGATATTGATTTAACTAGATGGATCTCATTACAAGCTAAAACAACACTTTGTGGGA
CAAAATTTGAATGCTAAAACCAAC
ACTTACTTTGGGACGGAGGGA
GTATGTAGTTACTTTAGG
dot-bracket secondary structure
...((((...)))).((((((
(((((((((((((.(((((((
((((((((.....((((((..((((.((.......)).))))...(.....(((.(((
(..(((((..(((((((..((((((.((.....)).))))))(((((.(((...(((.((....)).))).))).))))).)))).)))..)))))))))
.)))...)((.....)).((.((((((((((((((.((((((..(((.(((.((((....)))).))).))).))))))..)))))).....))))))))
.))..))))))..)))))).))))
))))).)))))))))))))))
))))..............
SIMILARITIES
miRBase
osa-MIR1862c
:
0.00002
PMRD
osa-miRf10381-akr
:
0.000001
microPC
miR1439
:
0.000001
UniProt
no hits
RFAM
MIR806: 0.0000004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record