ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCGG miRNA* GGGCAACACTCCGTTGGCAGG mismatches: 4 bulges: 0 |
pre-miRNA
GTGATTGTGGAGGTCCATTGCAGGGCAACACTCCGTTGGCAGGTGCTACGCAAACCGGCCCTGCCGCCGGTCACCTGCCAAAGGAGATTTGCCCGGCGAT
GCGCCTGCACTGCTT
dot-bracket secondary structure
......(((.((((.((((((.((((((..((((.((((((((((........((((((......)))))))))))))))).))))..)))))).)))))
).)))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGATTGTGGAGGTCCATTGCAGGGCAACACTCCGTTGGCAGGTGCTACGCAAACCGGCCCTGCCGCCGGTCACCTGCCAAAGGAGATTTGCCCGGCGAT
GCGCCTGCACTGCTT
dot-bracket secondary structure
......(((.((((.((((((.((((((..((((.((((((((((........((((((......)))))))))))))))).))))..)))))).)))))
).)))).))).....
SIMILARITIES| miRBase rco-MIR399c: 0.0000004 PMRD vvi-miR399e: 0.000006 microPC miR399: 3e-35 | UniProt no hits RFAM mir-399: 0.0000000004 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST045886) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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