ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAGATGTCG miRNA* GCGTGCTTGGCGAGCTCGCCG mismatches: 3 bulges: 0 |
pre-miRNA
AGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCGAGCTT
GGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGG
dot-bracket secondary structure
.((((((((..((((.(((((((((((.((((..(((((.(((((...((...(((((....)))))))))))).))))).(((((....((....)).)
)))).)))).))))))))))).))))..))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCGAGCTT
GGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGG
dot-bracket secondary structure
.((((((((..((((.(((((((((((.((((..(((((.(((((...((...(((((....)))))))))))).))))).(((((....((....)).)
)))).)))).))))))))))).))))..))))))))........
SIMILARITIES| miRBase no hits PMRD osa-miRf10132-akr: 2e-64 microPC no hits | UniProt sp|Q6ZBP3|H2B2_ORYSJ: 3e-19 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
