ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGCCTCAAGCTT miRNA* GCATGAGGCAGGAACTGCATT mismatches: 2 bulges: 0 |
pre-miRNA
GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCCATTGCAAGATCATACTTGTGGCTTTCATGCAAGTTGTGCAGTTG
TTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((.(((((((((((.....(((....))).....))))))))))).))))))).)))))))).
)))))))).))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCCATTGCAAGATCATACTTGTGGCTTTCATGCAAGTTGTGCAGTTG
TTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((.(((((((((((.....(((....))).....))))))))))).))))))).)))))))).
)))))))).))))).))))..
SIMILARITIES| miRBase ssp-MIR444b: 3e-48 PMRD osa-miR444f: 4e-16 microPC miR444: 6e-40 | UniProt no hits RFAM MIR444: 2e-46 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
