ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGAACAGAGGGAGTACC miRNA* TGCTCTCCTGTTCTAAAGGA mismatches: 2 bulges: 1 |
pre-miRNA
AAATGCACTTATTTTGGAACAGAGGGAGTACCTACCAAATTCAGACAACAGTATATTTGGGTGGCAGCTGCCAGCTGGAAAAGATTGGAGGTTGCCATCC
ACCATCCTTGCTCTCCTGTTCTAAAGGAAGGGCACA
dot-bracket secondary structure
...(((.(((.(((((((((((.(((((((...................((.((...((((((((((((.((((((.....)).)))).)))))))))))
)..)).)))))))))))))))))))).))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATGCACTTATTTTGGAACAGAGGGAGTACCTACCAAATTCAGACAACAGTATATTTGGGTGGCAGCTGCCAGCTGGAAAAGATTGGAGGTTGCCATCC
ACCATCCTTGCTCTCCTGTTCTAAAGGAAGGGCACA
dot-bracket secondary structure
...(((.(((.(((((((((((.(((((((...................((.((...((((((((((((.((((((.....)).)))).)))))))))))
)..)).)))))))))))))))))))).))).)))..
SIMILARITIES| miRBase osa-MIR1862d: 0.00003 PMRD osa-miR1862d: 0.00003 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR806: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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