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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001858
species: Panicum virgatum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGAACAGAGGGAGTACC

miRNA*
 TGCTCTCCTGTTCTAAAGGA

mismatches: 2
bulges: 1
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pre-miRNA
 AAATGCACTTATTTTGGAACAGAGGGAGTACCTACCAAATTCAGACAACAGTATATTTGGGTGGCAGCTGCCAGCTGGAAAAGATTGGAGGTTGCCATCC
ACCATCCTTGCTCTCCTGTTCTAAAGGAAGGGCACA

dot-bracket secondary structure
...(((.(((.(((((((((((.(((((((...................((.((...((((((((((((.((((((.....)).)))).)))))))))))
)..)).)))))))))))))))))))).))).)))..


SIMILARITIES
miRBase osa-MIR1862d: 0.00003

PMRD osa-miR1862d: 0.00003

microPC miR1439: 0.0001		UniProt no hits

RFAM MIR806: 0.0001		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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