miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001877
species: Parthenium argentatum
miRNA family: miR319b
source: miRNEST

Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAGCTTTCTTCGGTCCACTC

miRNA*
 TTGGACTGAAGGGAGCTCCCT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 CATAAGAGAAAGAGAGCTTTCTTCGGTCCACTCACGGGTTACGATAAGATATCAATTAGCTGCCGACTCATTCACCCAAATACTAGGCCAAAATCTGTTTA
TAGTGCTTAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGTGTCCTGTATTTGGACTGAAGGGAGCTCCCTTATATTTC

dot-bracket secondary structure
)........(((.(((((((((((((((((...(((((.(((..((((((.((((((..((.(((..(((((((..((..((((((((......(((....
))).))))))))..))..)))))))..))).))...)))))))))))).))).)))))...))))))))))))))))).))).......


SIMILARITIES
miRBase vvi-MIR319c: 3.0E-24

PMRD vvi-miR319c: 3.0E-24

microPC miR319: 5.0E-23		UniProt no hits

RFAM 9MIR159: 6.0E-23		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;