ABOUT THIS RECORDspecies: Parthenium argentatum
miRNA family: miR164c
source: miRNEST
Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATGTGCCCGTCTTCTCCATC miRNA* TGGAGAAGCAGGGTACGTGCA mismatches: 3 bulges: 0 |
pre-miRNA
CAAGATCTATGACGTAGGTGCTGATCAAAATGGAGAAGCAGGGTACGTGCATTACTAACTCATCATGAGAACCTTGGGTCAAGGTTCCTAACCATGTAAC
CTTGGGTTAAGGTTCATGTTTGTGACTAAGGATCGTGTACATGTGTGTTAGTGATTCATGTGCCCGTCTTCTCCATCATGACCACCTACACCTTAACATC
AAAG
dot-bracket secondary structure
.............(((((((....(((..(((((((((..(((((((((.(((((((((....(((..(((((((((.((((((((...........)))
))))).))))))))).(((.(((((.......))))).))).))).))))))))).)))))))))..)))))))))..))).)))))))...........
....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAGATCTATGACGTAGGTGCTGATCAAAATGGAGAAGCAGGGTACGTGCATTACTAACTCATCATGAGAACCTTGGGTCAAGGTTCCTAACCATGTAAC
CTTGGGTTAAGGTTCATGTTTGTGACTAAGGATCGTGTACATGTGTGTTAGTGATTCATGTGCCCGTCTTCTCCATCATGACCACCTACACCTTAACATC
AAAG
dot-bracket secondary structure
.............(((((((....(((..(((((((((..(((((((((.(((((((((....(((..(((((((((.((((((((...........)))
))))).))))))))).(((.(((((.......))))).))).))).))))))))).)))))))))..)))))))))..))).)))))))...........
....
SIMILARITIES| miRBase ptc-MIR164e: 0.0000000007 PMRD ptc-miRf11320-akr: 0.0000000007 microPC miR164: 0.000000003 | UniProt no hits RFAM MIR164: 0.00000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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