miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001882
species: Parthenium argentatum
miRNA family: miR164c
source: miRNEST

Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATGTGCCCGTCTTCTCCATC

miRNA*
 TGGAGAAGCAGGGTACGTGCA

mismatches: 3
bulges: 0
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pre-miRNA
 CAAGATCTATGACGTAGGTGCTGATCAAAATGGAGAAGCAGGGTACGTGCATTACTAACTCATCATGAGAACCTTGGGTCAAGGTTCCTAACCATGTAAC
CTTGGGTTAAGGTTCATGTTTGTGACTAAGGATCGTGTACATGTGTGTTAGTGATTCATGTGCCCGTCTTCTCCATCATGACCACCTACACCTTAACATC
AAAG

dot-bracket secondary structure
.............(((((((....(((..(((((((((..(((((((((.(((((((((....(((..(((((((((.((((((((...........)))
))))).))))))))).(((.(((((.......))))).))).))).))))))))).)))))))))..)))))))))..))).)))))))...........
....


SIMILARITIES
miRBase ptc-MIR164e: 0.0000000007

PMRD ptc-miRf11320-akr: 0.0000000007

microPC miR164: 0.000000003		UniProt no hits

RFAM MIR164: 0.00000001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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