ABOUT THIS RECORDspecies: Paullinia cupana var. sorbilis
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Paullinia cupana var. sorbilis Paullinia cupana Paullinia Sapindaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCA miRNA* ATGAAGAGTGGCAATGAAG mismatches: 4 bulges: 2 |
pre-miRNA
GAGTAATCTGTACATGCCTCAACTATCTTAATCATCATCATCATCATCATCAACATCATCATCATCATGGTTATAATAAGTGTAGTTTCCATGGTTCTAT
CCTTCCTAGTCACAAACTGGTGACGAAGATGATGAAGATGAAGAGTGGCAATGAAGAGGTACTTAGGAGGGCCTTGTG
dot-bracket secondary structure
((....))..((((.((((...(((.(((..((((..((((..((.(((((....((((((((.((((((..((.((....)).))..)))))).....(
(.((.(((((.....))))).)).)).)))))))).))))).))))))..))))..)))....)))..))))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAGTAATCTGTACATGCCTCAACTATCTTAATCATCATCATCATCATCATCAACATCATCATCATCATGGTTATAATAAGTGTAGTTTCCATGGTTCTAT
CCTTCCTAGTCACAAACTGGTGACGAAGATGATGAAGATGAAGAGTGGCAATGAAGAGGTACTTAGGAGGGCCTTGTG
dot-bracket secondary structure
((....))..((((.((((...(((.(((..((((..((((..((.(((((....((((((((.((((((..((.((....)).))..)))))).....(
(.((.(((((.....))))).)).)).)))))))).))))).))))))..))))..)))....)))..))))..))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
