ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR1311
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGAGTTTTGCCAGTTCCGCC miRNA* CGCACTGGCATAACTCTGACC mismatches: 2 bulges: 1 |
pre-miRNA
CCGCCTCTGCTTATGGGCTTGGTAGGATTAGGCGCACTGGCATAACTCTGACCATAGTTTATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTATTGTGCC
TTTAAGTAATTTC
dot-bracket secondary structure
)......((((((.((((.((((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))).)))
).)))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGCCTCTGCTTATGGGCTTGGTAGGATTAGGCGCACTGGCATAACTCTGACCATAGTTTATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTATTGTGCC
TTTAAGTAATTTC
dot-bracket secondary structure
)......((((((.((((.((((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))).)))
).)))))).....
SIMILARITIES| miRBase pab-MIR1311: 9.0E-45 PMRD pta-miR1311: 1.0E-12 microPC miR1311: 1.0E-25 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1311 from microPC (MNEST046092), pab-MIR1311 from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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