ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR2004
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTTTTGATGTTATTTTGT miRNA* AAAGTATTTCTAAAAAAAAA mismatches: 4 bulges: 1 |
pre-miRNA
TTATTTTTGTTTTTGTTTTGATGTTATTTTGTACCATCCTATAGGACTTGTGTCTCGGGCTTGTCACTAGAGACAAATATCGCACAATAAAGTATTTCTA
AAAAAAAAAAAAAAAG
dot-bracket secondary structure
...(((((.(((((.(((.((...((((((((....(((....)))..(((((...((..(((((......)))))...)))))))))))))))..)).)
)).))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTATTTTTGTTTTTGTTTTGATGTTATTTTGTACCATCCTATAGGACTTGTGTCTCGGGCTTGTCACTAGAGACAAATATCGCACAATAAAGTATTTCTA
AAAAAAAAAAAAAAAG
dot-bracket secondary structure
...(((((.(((((.(((.((...((((((((....(((....)))..(((((...((..(((((......)))))...)))))))))))))))..)).)
)).))))).)))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
