ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIRf1017
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTATCTGCACTTGCACCTC miRNA* GGTGCAAGTCTAGAAAACA mismatches: 2 bulges: 2 |
pre-miRNA
ACAAATCGAATTGCTTGGTGATATTTATTATAGGTGCAAGTCTAGAAAACATGTGAAGAGACTTCTGAACGGGACCTAGCCCTAATACCAAGCGTCCCTC
TTCATTAGGCTTTGGTTTTATCTGCACTTGCACCTCACCATTAAATCCATTACTAGCATTCCACG
dot-bracket secondary structure
.......((((.(((.(((((((((((....((((((((((.((((((((....((((...((..((((.(((((((.............)).)))))..
))))..)).)))).))))..)))).))))))))))......)))))..)))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ACAAATCGAATTGCTTGGTGATATTTATTATAGGTGCAAGTCTAGAAAACATGTGAAGAGACTTCTGAACGGGACCTAGCCCTAATACCAAGCGTCCCTC
TTCATTAGGCTTTGGTTTTATCTGCACTTGCACCTCACCATTAAATCCATTACTAGCATTCCACG
dot-bracket secondary structure
.......((((.(((.(((((((((((....((((((((((.((((((((....((((...((..((((.(((((((.............)).)))))..
))))..)).)))).))))..)))).))))))))))......)))))..)))))))))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
