miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis



ABOUT THIS RECORD

ID: MNEST001990
species: Picea sitchensis
miRNA family: MIRf1017
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTATCTGCACTTGCACCTC

miRNA*
GGTGCAAGTCTAGAAAACA

mismatches: 2
bulges: 2

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pre-miRNA
ACAAATCGAATTGCTTGGTGATATTTATTATAGGTGCAAGTCTAGAAAACATGTGAAGAGACTTCTGAACGGGACCTAGCCCTAATACCAAGCGTCCCTC
TTCATTAGGCTTTGGTTTTATCTGCACTTGCACCTCACCATTAAATCCATTACTAGCATTCCACG


dot-bracket secondary structure
.......((((.(((.(((((((((((....((((((((((.((((((((....((((...((..((((.(((((((.............)).)))))..
))))..)).)))).))))..)))).))))))))))......)))))..)))))))))))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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