ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR949
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCGGGAATCCAATGCGCC miRNA* TGTATTGATTTCCGGGGAAG mismatches: 0 bulges: 1 |
pre-miRNA
GAAGGAGAGCCTCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGAT
TTCCGGGGAAGCCCTGGTT
dot-bracket secondary structure
..(((...((.((((((((((((.((((((((((((((((((((((.(((..((((((.....))))))..))).)))))))))))))))))))))))))
))))))))).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAGGAGAGCCTCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGAT
TTCCGGGGAAGCCCTGGTT
dot-bracket secondary structure
..(((...((.((((((((((((.((((((((((((((((((((((.(((..((((((.....))))))..))).)))))))))))))))))))))))))
))))))))).)))))....
SIMILARITIES| miRBase pta-MIR949: 7e-58 PMRD pta-miR949: 7e-58 microPC miR949: 1e-50 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR949 from microPC (MNEST045449) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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